OK. I'll try it on a fresh install from git later on today.
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So no other ideas then? I tried it on another box too and experienced the same failures.Michael Larabel
https://www.michaellarabel.com/
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Ubuntu and it had worked in the same configuration with 0.1 and 0.2 of md-gromacsMichael Larabel
https://www.michaellarabel.com/
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OK, I know why. Ubuntu uses dash as it's /bin/sh and it looks like it doesn't support something I added in 0.3 (not sure what yet).
Edit: I know what the problem is, it's I/O redirection. Patch coming shortly.Last edited by uncle_fungus; 09 May 2008, 08:33 AM.
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Patch for dash I/O redirection:
Code:diff --git a/pts/test-resources/md-gromacs/install.sh b/pts/test-resources/md-gromacs/install.sh index 40d3ec5..491f218 100644 --- a/pts/test-resources/md-gromacs/install.sh +++ b/pts/test-resources/md-gromacs/install.sh @@ -49,7 +49,7 @@ if [ -f $THIS_DIR/flopcount ] rm -f $THIS_DIR/flopcount fi mkdir $THIS_DIR/gmxbench -tar -xvf gmxbench-3.0.tar.gz -C $THIS_DIR/gmxbench/ &>/dev/null +tar -xvf gmxbench-3.0.tar.gz -C $THIS_DIR/gmxbench/ 1>/dev/null 2>&1 case "\$1" in \"villin\") @@ -75,12 +75,12 @@ esac case "\$2" in \"mpi\") - $THIS_DIR/gromacs333_/bin/grompp -np \$NUM_CPU_CORES -nov &>/dev/null - $THIS_DIR/mpich2_/bin/mpiexec -np \$NUM_CPU_CORES $THIS_DIR/gromacs333_/bin/mdrun &> $THIS_DIR/flopcount + $THIS_DIR/gromacs333_/bin/grompp -np \$NUM_CPU_CORES -nov 1>/dev/null 2>&1 + $THIS_DIR/mpich2_/bin/mpiexec -np \$NUM_CPU_CORES $THIS_DIR/gromacs333_/bin/mdrun 1>$THIS_DIR/flopcount 2>&1 ;; \"single-node\") - $THIS_DIR/gromacs333_/bin/grompp -nov &>/dev/null - $THIS_DIR/gromacs333_/bin/mdrun_single &> $THIS_DIR/flopcount + $THIS_DIR/gromacs333_/bin/grompp -nov 1>/dev/null 2>&1 + $THIS_DIR/gromacs333_/bin/mdrun_single 1>$THIS_DIR/flopcount 2>&1 ;; *) exit
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Looks like that fixed it, thanks: http://global.phoronix-test-suite.co...0513-17000-220Michael Larabel
https://www.michaellarabel.com/
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Patch to add new *size info to profile (and change state to verified if that's ok).
Code:diff --git a/pts/test-profiles/md-gromacs.xml b/pts/test-profiles/md-gromacs.xml index 20da79f..bc08eea 100644 --- a/pts/test-profiles/md-gromacs.xml +++ b/pts/test-profiles/md-gromacs.xml @@ -4,8 +4,10 @@ <TestType>Processor</TestType> <SoftwareType>Scientific</SoftwareType> <License>FREE</License> - <Status>UNVERIFIED</Status> + <Status>VERIFIED</Status> <Maintainer>Andrew Schofield</Maintainer> + <DownloadSize>30</DownloadSize> + <EnvironmentSize>231</EnvironmentSize> </TestProfile> <TestInformation> <Title>GROMACS MD Benchmark</Title>
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